PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 486209
Common NameARALYDRAFT_486209
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 278aa    MW: 31579.2 Da    PI: 5.7907
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
486209genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.2e-202677156
     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
            ++y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a++kl+g+
  486209 26 CQYRGVRQRT-WGKWVAEIREPKK---RARLWLGSFATAEEAAMAYDEAALKLYGH 77
            68*****999.**********965...5*************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.64E-312686No hitNo description
PfamPF008474.0E-142677IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-222785IPR016177DNA-binding domain
SMARTSM003808.4E-372790IPR001471AP2/ERF domain
PROSITE profilePS5103223.2612784IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-302785IPR001471AP2/ERF domain
PRINTSPR003673.2E-102839IPR001471AP2/ERF domain
PRINTSPR003673.2E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MEKSSSMKQW KKGPARGKGG PQNALCQYRG VRQRTWGKWV AEIREPKKRA RLWLGSFATA  60
EEAAMAYDEA ALKLYGHDAY LNLPHLQRNT RPSLTNSQRF KWVPSRKFIS MFPSCGMLNV  120
NAQPSVHVIQ QRLEELKKTG LLSQSYSSSS SSTESKTNTS FLDEKTSKGE TDNMFEGADQ  180
KKPEIDLTEF LQQLGILKDE NQAEPSEVAE CHSPPPWNEQ EETGSPFKAQ NFSWDTLIEM  240
PRTETTTMQF DSSNFRSYDF EDDVSFPSIW DYCGSLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-182784260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2272170.0AK227217.1 Arabidopsis thaliana mRNA for AP2 transcription factor - like protein, complete cds, clone: RAFL09-96-P04.
GenBankAL0496600.0AL049660.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F15B8.
GenBankAY0872430.0AY087243.1 Arabidopsis thaliana clone 332 mRNA, complete sequence.
GenBankBT0289450.0BT028945.1 Arabidopsis thaliana At3g57600 mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002876426.10.0hypothetical protein ARALYDRAFT_486209
SwissprotQ9SVX50.0DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLD7LVU70.0D7LVU7_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.5__2201__AT3G57600.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81682638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.11e-177ERF family protein